PLABO

Programming Linux And Bioiformatics Omnibus (by Pablo Marin-Garcia)

Friday, 30 August 2019

PyCharm 2019.2 IDE was not starting on MacOSX: missing jdk

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PyCharm 2019.2  is looking for java8 and does not come with a jdk folder. So if you have java11 it will not even start. I have had this prob...
Tuesday, 15 August 2017

Change Docker default software dir

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Change Docker default software dir For Docekr 17.xx in Ubuntu 16.04 don't follow the advice of updating the /etc/default/docker and...
Monday, 10 October 2016

XRDP in centos7: installation, enabling it and setting port for reconnecting a previous session

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RDP is more efficient and has better performing than VNC and probably is more secure. Installation The adventage of x11vnc is that you ...
Saturday, 13 February 2016

Choosing the right dark theme in R studio

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Rstudio Dark Themes Seems that Iddle fingers, Mervibore soft,Twilight and Tomorrow Night have the softest color schema with good contrast ...
Sunday, 31 January 2016

Installing mysqlworkbench and mysql utils in MacOSX Yosemite

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Installing MySQL, mysqlworkbench and mysql-utils in Yosemite For installing things like *nix in MacOSX I use homebrew. Homebrew...
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Wednesday, 15 October 2014

new security vulnerability called POODLE

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There Is a New Security Vulnerability Named POODLE, and It Is Not Cute: http://www.wired.com/2014/10/poodle-explained/ https://supportforu...
Thursday, 7 August 2014

Ubuntu 14.04 new Ibus is interfering with default emacs keybinding control-space

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In emacs you select text marking a starting selection point with control-space. This is a fundamental key binding in emacs. Now in the new ...
Thursday, 27 February 2014

perl gzip libraries (probably zlib issue) does not play well with bgzip files.

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In bioinformatcis, bgzip files are important for random access to big files . Bgzip is a program modified from gzip program that uses bloc...
Monday, 24 February 2014

automatic encrypting decrypting with emacs

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I have been for long time wondering if there was a way to automatically encrypt and decrypt files when accessing them, not leaving an unencr...
Tuesday, 20 August 2013

Reducing batch effects in methylation analysis

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In our sequencing facility we have processed 4 illumina 450K methylation chips for the same study at 2 diferent times. We took care of sprea...
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Pablo Marin-Garcia
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