NAR 2010 databases
- Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, and David Posada
- ALTER: program-oriented conversion of DNA and protein alignments
- Nucl. Acids Res. (2010) 38(suppl 2): W14-W18 doi:10.1093/nar/gkq321
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Alexey V. Antonov, Esther E. Schmidt, Sabine Dietmann, Maria Krestyaninova, and Henning Hermjakob
- R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases
- Nucl. Acids Res. (2010) 38(suppl 2): W78-W83 doi:10.1093/nar/gkq482
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Kunlin Zhang, Sijia Cui, Suhua Chang, Liuyan Zhang, and Jing Wang
- i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study
- Nucl. Acids Res. (2010) 38(suppl 2): W90-W95 doi:10.1093/nar/gkq324
- Vivek Kaimal, Eric E. Bardes, Scott C. Tabar, Anil G. Jegga, and Bruce J. Aronow
- ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems
- Nucl. Acids Res. (2010) 38(suppl 2): W96-W102 doi:10.1093/nar/gkq418
- Jignesh R. Parikh, Bertram Klinger, Yu Xia, Jarrod A. Marto, and Nils Blüthgen
- Discovering causal signaling pathways through gene-expression patterns
- Nucl. Acids Res. (2010) 38(suppl 2): W109-W117 doi:10.1093/nar/gkq424
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Y.-T. Wang, Y.-H. Huang, Y.-C. Chen, C.-L. Hsu, and U.-C. Yang
- PINT: Pathways INtegration Tool
- Nucl. Acids Res. (2010) 38(suppl 2): W124-W131 doi:10.1093/nar/gkq499
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Ludovic Cottret, David Wildridge, Florence Vinson, Michael P. Barrett, Hubert Charles, Marie-France Sagot, and Fabien Jourdan
- MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks
- Nucl. Acids Res. (2010) 38(suppl 2): W132-W137 doi:10.1093/nar/gkq312
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Marija Cvijovic, Roberto Olivares-Hernández, Rasmus Agren, Niklas Dahr, Wanwipa Vongsangnak, Intawat Nookaew, Kiran Raosaheb Patil, and Jens Nielsen
- BioMet Toolbox: genome-wide analysis of metabolism
- Nucl. Acids Res. (2010) 38(suppl 2): W144-W149 doi:10.1093/nar/gkq404
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Richard Côté, Florian Reisinger, Lennart Martens, Harald Barsnes, Juan Antonio Vizcaino, and Henning Hermjakob
- The Ontology Lookup Service: bigger and better
- Nucl. Acids Res. (2010) 38(suppl 2): W155-W160 doi:10.1093/nar/gkq331
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Xin He, Yanen Li, Radhika Khetani, Barry Sanders, Yue Lu, Xu Ling, ChengXiang Zhai, and Bruce Schatz
- BSQA: integrated text mining using entity relation semantics extracted from biological literature of insects
- Nucl. Acids Res. (2010) 38(suppl 2): W175-W181 doi:10.1093/nar/gkq544
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Scott F. Saccone, Raphael Bolze, Prasanth Thomas, Jiaxi Quan, Gaurang Mehta, Ewa Deelman, Jay A. Tischfield, and John P. Rice
- SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study
- Nucl. Acids Res. (2010) 38(suppl 2): W201-W209 doi:10.1093/nar/gkq513
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Goetz, Ana Conesa, Joaquín Tárraga, Alberto Pascual-Montano, Ruben Nogales-Cadenas, Javier Santoyo, Francisco García, Martina Marbà, David Montaner, and Joaquín Dopazo
- Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
- Nucl. Acids Res. (2010) 38(suppl 2): W210-W213 doi:10.1093/nar/gkq388
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Miguel Vazquez, Ruben Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, Jose M. Carazo, Francisco Tirado, Alberto Pascual-Montano, and Pedro Carmona-Saez
- MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures
- Nucl. Acids Res. (2010) 38(suppl 2): W228-W232 doi:10.1093/nar/gkq476
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Maria José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, and Ana Conesa
- Serial Expression Analysis: a web tool for the analysis of serial gene expression data
- Nucl. Acids Res. (2010) 38(suppl 2): W239-W245 doi:10.1093/nar/gkq488
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, and Nir Ben-Tal
- ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
- Nucl. Acids Res. (2010) 38(suppl 2): W529-W533 doi:10.1093/nar/gkq399
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, and Nir Ben-Tal
- MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data
- Nucl. Acids Res. (2010) 38(suppl 2): W523-W528 doi:10.1093/nar/gkq528
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Jiten Bhagat, Franck Tanoh, Eric Nzuobontane, Thomas Laurent, Jerzy Orlowski, Marco Roos, Katy Wolstencroft, Sergejs Aleksejevs, Robert Stevens, Steve Pettifer, Rodrigo Lopez, and Carole A. Goble
- BioCatalogue: a universal catalogue of web services for the life sciences
- Nucl. Acids Res. (2010) 38(suppl 2): W689-W694 doi:10.1093/nar/gkq394
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Mickael Goujon, Hamish McWilliam, Weizhong Li, Franck Valentin, Silvano Squizzato, Juri Paern, and Rodrigo Lopez
- A new bioinformatics analysis tools framework at EMBL–EBI
- Nucl. Acids Res. (2010) 38(suppl 2): W695-W699 doi:10.1093/nar/gkq313
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Huabin Hou, Fangqing Zhao, LingLin Zhou, Erle Zhu, Huajing Teng, Xiaokun Li, Qiyu Bao, Jinyu Wu, and Zhongsheng Sun
- MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation
- Nucl. Acids Res. (2010) 38(suppl 2): W732-W736 doi:10.1093/nar/gkq302
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
- Dougu Nam, Jin Kim, Seon-Young Kim, and Sangsoo Kim
- GSA-SNP: a general approach for gene set analysis of polymorphisms
- Nucl. Acids Res. (2010) 38(suppl 2): W749-W754 doi:10.1093/nar/gkq428
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF Supplementary Data
- Zefeng Zhang, Hao Lin, and Bin Ma
- ZOOM Lite: next-generation sequencing data mapping and visualization software
- Nucl. Acids Res. (2010) 38(suppl 2): W743-W748 doi:10.1093/nar/gkq538
- Abstract FREE Full Text (HTML) Full Text (PDF) Screen PDF
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