$ brew install mysql $ mysql.server start # and optionaly make it more secure $ mysql_secure_installation
$ brew tap caskroom/cask # optional $ brew install homebrew/completions/brew-cask-completion ## install workbench and utils $ brew cask install mysqlworkbench # mysqlworkbench staged at '/opt/homebrew-cask/Caskroom/mysqlworkbench/6.3.6' # Symlinking App 'MySQLWorkbench.app' to '/Users/pmg/Applications/MySQLWorkbench.app' $ brew cask install mysql-utilities # mysql-utilities staged at '/opt/homebrew-cask/Caskroom/mysql-utilities/1.5.6'
$ mysqluc -e "help utilities" ERROR: The MySQL Connector/Python module was not found. MySQL Utilities requires the connector to be installed. Please check your paths or download and install the Connector/Python from http://dev.mysql.com.
$ cd /opt/homebrew-cask/Caskroom/mysql-utilities/ $ wget http://dev.mysql.com/get/Downloads/Connector-Python/mysql-connector-python-2.1.3.tar.gz $ tar -zxvf mysql-connector-python-2.1.3.tar.gz $ cd mysql-connector-python-2.1.3/ # install for both python $ sudo python ./setup.py install $ sudo python3 ./setup.py install </ pre>
In emacs you select text marking a starting selection point with control-space. This is a fundamental key binding in emacs. Now in the new version of Ubuntu (14.04) the default service for controlling multilingual input in linux has been changed to Ibus. The issue is that Ibus default key binding to control-space.
If you want to use emacs you probably should change this to something else. Go to a terminal and write 'ibus-setup' and at the right of the input method line you will find three dots '...' click there and change your key binding to Ibus pressing in the three dots in the key code line and then clik in disable. The text will change to 'new accelerator', press your combination of keys and you are done. I have changed mine to super-alt-space (super is the windows key).
#!/usr/bin/env perl
use strict;
use IO::Uncompress::Gunzip qw(gunzip $GunzipError) ;
my $infile = shift;
my $infh = IO::Uncompress::Gunzip->new( $infile )
or die "IO::Uncompress::Gunzip failed: $GunzipError\n";
my $line_count = 0;
while (my $line=<$infh>){
$line_count++
}
print "total lines read = $line_count\n";
$ perl /home/pmg/tmp/test_zlib-bgzip.pl varsit.vcf.gz
total lines read = 419
#!/usr/bin/env perl
use strict;
# I can use bgzip intead gzip
my $infile = shift;
open(my $infh , 'gzip -dc '.$infile.' |');
my $line_count = 0;
while (my $line=<$infh>){
$line_count++
}
print "total lines read = $line_count\n";
$ perl /home/pmg/tmp/test_gzip-bgzip.pl varsit.vcf.gz
total lines read = 652829
(require 'epa-file) (epa-file-enable) ;; as it is annoying to be asked if I want passphrase or publick/private key ;; I set passphrase as default (setq epa-file-select-keys nil)
sudo apt-get install gnupg-agent Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: libassuan0 pinentry-gtk2 Suggested packages: pinentry-doc The following NEW packages will be installed: gnupg-agent libassuan0 pinentry-gtk2 0 upgraded, 3 newly installed, 0 to remove and 1 not upgraded.
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